PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf04072g01027.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 412aa    MW: 46098.7 Da    PI: 8.1571
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf04072g01027.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.51.5e-171563249
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT.SEEEEE CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst.gklyey 49
                              +ie k n  vtfskRr+g++KKA+EL +LC+ae  +++f+++ +k+y +
  Peinf101Scf04072g01027.1 15 KIEKKGNLDVTFSKRREGMFKKANELGILCGAETGIVVFAPNnNKVYSF 63
                              6999***********************************9862577776 PP

2SRF-TF48.89.3e-16202250249
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT.SEEEEE CS
                    SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst.gklyey 49 
                               +ie k n  vtfskRr+g++KK +EL +LC+ae  +++f+++ +k+y +
  Peinf101Scf04072g01027.1 202 KIEKKGNLDVTFSKRREGMFKKTNELDILCGAETGIVVFAPNnNKVYSF 250
                               6999***********************************9862577776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.647667IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-22666IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-23779IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-13828IPR002100Transcription factor, MADS-box
PfamPF003196.9E-201563IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-132843IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-134364IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.694193254IPR002100Transcription factor, MADS-box
SMARTSM004328.0E-21193253IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-22194266IPR002100Transcription factor, MADS-box
PfamPF003191.9E-18202250IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MPRKSQGRKK VEMAKIEKKG NLDVTFSKRR EGMFKKANEL GILCGAETGI VVFAPNNNKV  60
YSFGHPSVDQ IVDRYIARYL PNDDESSDDG VNPRLIEALR KANASIINEL NEKEQALERE  120
KMRGEALRAV RRDNGEHNWW EAPINKLNYV QLQQVKEAME GAYEKVDREA LRLKTANENV  180
AFPYSNFASA LAPGRKKVEM AKIEKKGNLD VTFSKRREGM FKKTNELDIL CGAETGIVVF  240
APNNNKVYSF GHPSVDQIVD RYLARYLPND DESSDDGVNP GLIEALRKAN ASIINELNEK  300
EQALEREKMR GEALRAVRRD NGEHNWWEAP INKLNYVQLQ QVKEAMEGAY EKVDREALRL  360
KTANENVAFP YSNFASALAP GPGHNFDSSG ASGSGSTSYF DSNRASGSGS AS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009601691.11e-54PREDICTED: agamous-like MADS-box protein AGL62
STRINGSolyc01g106730.1.13e-49(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2530922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-35AGAMOUS-like 61